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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
16
ATAC-seq
8
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
24
DNA binding
18
DNA accessibility
8
Transcription
1
3D chromatin structure
Target of assay
9
control
8
histone
8
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
4
narrow histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
34
bam
25
bigWig
16
bed narrowPeak
8
bigBed narrowPeak
8
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
51
Homo sapiens
Biosample type
282
tissue
240
primary cell
140
in vitro differentiated cells
51
cell line
Organ
36
pancreas
23
epithelium
15
kidney
Project
50
AMP
1
T1D
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
51
AMP-T2D consortium
Audit category:
34
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
cell line
EndoC_BH1
1
16
4
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
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