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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
68
ChIP-seq
9
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
78
Transcription
68
DNA binding
9
DNA accessibility
1
DNA methylation
Target of assay
62
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
156
bam
140
bigWig
78
tsv
70
bed narrowPeak
61
fastq
56
bigBed narrowPeak
8
tagAlign
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
157
Homo sapiens
Biosample type
571
tissue
157
cell line
49
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
48
liver
26
epithelium
26
pancreas
15
blood
15
bodily fluid
Project
157
AMP
Genome assembly (visualization)
149
GRCh38
147
hg19
Lab
157
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
45
1
1
1
EndoC_BH1
26
GM12878
15
iPSC derived cell line
2
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