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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
4
total RNA-seq
2
DNase-seq
2
Hi-C
Assay category
50
DNA binding
4
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
32
transcription factor
9
control
7
histone
7
histone modification
7
recombinant protein
4
broad histone mark
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
56
bam
47
bigWig
42
bed narrowPeak
35
bigBed narrowPeak
28
fastq
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
58
Homo sapiens
Biosample type
249
tissue
58
cell line
34
primary cell
8
in vitro differentiated cells
Organ
27
blood
27
bodily fluid
15
kidney
15
pancreas
2
epithelium
1
liver
Project
58
AMP
Genome assembly (visualization)
47
GRCh38
47
hg19
Lab
58
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
GM12878
27
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
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