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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
3
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
23
DNA binding
3
Transcription
1
3D chromatin structure
1
DNA accessibility
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
315
November, 2017
70
February, 2021
61
November, 2018
42
August, 2021
28
December, 2018
28
October, 2019
23
January, 2019
6
March, 2020
5
February, 2023
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
27
bam
18
bigWig
14
bed narrowPeak
7
bigBed narrowPeak
3
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
28
Homo sapiens
Biosample type
242
tissue
28
cell line
8
in vitro differentiated cells
1
primary cell
Organ
15
kidney
15
pancreas
epithelium
Project
28
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
28
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
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