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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
20
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
narrow histone mark
Date released
308
November, 2017
96
February, 2021
61
November, 2018
42
August, 2021
28
December, 2018
27
October, 2019
22
January, 2019
20
May, 2021
12
November, 2019
10
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
26
bam
17
bigWig
12
bed narrowPeak
5
bigBed narrowPeak
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
27
Homo sapiens
Biosample type
113
tissue
27
cell line
25
primary cell
8
in vitro differentiated cells
Organ
15
kidney
12
pancreas
2
epithelium
Project
27
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
27
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
10
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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