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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ChIP-seq
Assay category
310
DNA binding
Target of assay
310
transcription factor
89
recombinant protein
77
control
55
RNA binding protein
37
histone
37
histone modification
20
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
45
November, 2018
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
305
bigWig
301
bed narrowPeak
298
bam
286
fastq
277
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
310
Homo sapiens
Biosample type
310
cell line
89
tissue
49
in vitro differentiated cells
10
primary cell
Organ
297
liver
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
310
AMP
Genome assembly (visualization)
301
hg19
258
GRCh38
Lab
299
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
BIOSAMPLE
ASSAY
310 results
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ChIP-seq
cell line
HepG2
297
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
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