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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
373
ChIP-seq
9
ATAC-seq
1
DNase-seq
Assay category
373
DNA binding
10
DNA accessibility
Target of assay
351
transcription factor
88
recombinant protein
62
RNA binding protein
30
chromatin remodeller
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
14
February, 2021
8
October, 2019
Available data
519
bam
466
bigWig
427
fastq
383
bed narrowPeak
348
bigBed narrowPeak
85
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
txt
1
vcf
Organism
383
Homo sapiens
Biosample type
821
tissue
383
cell line
227
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
308
liver
54
blood
54
bodily fluid
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
383
AMP
Genome assembly (visualization)
379
hg19
337
GRCh38
Lab
369
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
383 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
GM12878
54
smooth muscle cell of the coronary artery
4
8
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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