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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
14
total RNA-seq
2
ATAC-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
WGBS
1
whole genome sequencing assay
Assay category
90
DNA binding
14
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
transcription factor
82
recombinant protein
66
control
64
RNA binding protein
30
chromatin remodeller
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
other context
2
other post-translational modification
Date released
74
November, 2017
20
August, 2021
9
January, 2019
4
November, 2018
3
December, 2018
2
February, 2021
1
January, 2018
1
May, 2020
Available data
90
bam
90
fastq
44
bigWig
23
bed narrowPeak
19
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
114
Homo sapiens
Biosample type
322
tissue
114
cell line
22
primary cell
13
in vitro differentiated cells
Organ
104
liver
91
pancreas
78
epithelium
62
artery
62
blood vessel
62
heart
62
vasculature
12
kidney
10
blood
10
bodily fluid
8
embryo
1
mammary gland
Project
114
AMP
Genome assembly (visualization)
46
hg19
26
GRCh38
Lab
94
AMP-T2D consortium
20
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
114 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2
81
14
1
2
2
2
1
1
GM12878
9
1
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