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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
18
DNA accessibility
2
DNA binding
1
3D chromatin structure
Target of assay
5
control
3
nucleotide modification
Date released
16
May, 2021
6
November, 2020
3
November, 2019
2
August, 2021
2
March, 2020
1
February, 2023
Available data
2
bam
2
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
29
Homo sapiens
Biosample type
181
primary cell
30
cell line
15
tissue
4
in vitro differentiated cells
Organ
133
liver
37
pancreas
30
epithelium
7
blood
7
bodily fluid
7
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
30
AMP
Genome assembly (visualization)
52
hg19
GRCh38
Lab
24
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
29
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
30 results
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ATAC-seq
MeRIP-seq
Capture-C
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
18
6
2
2
1
1
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