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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
19
ATAC-seq
14
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
42
Transcription
20
DNA accessibility
14
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
transcription factor
Date released
26
February, 2021
21
May, 2021
15
November, 2019
10
August, 2021
6
November, 2020
5
March, 2020
2
October, 2019
1
February, 2023
Available data
58
bam
57
bigWig
43
tsv
14
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
85
Homo sapiens
Biosample type
401
primary cell
86
cell line
43
in vitro differentiated cells
15
tissue
Organ
104
liver
91
pancreas
78
epithelium
62
artery
62
blood vessel
62
heart
62
vasculature
12
kidney
10
blood
10
bodily fluid
8
embryo
1
mammary gland
Project
82
AMP
4
T1D
Genome assembly (visualization)
59
hg19
56
GRCh38
Lab
80
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
75
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
14
6
2
1
1
H1-hESC
8
glomerular visceral epithelial cell
1
1
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