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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
454
ChIP-seq
1
WGBS
Assay category
454
DNA binding
115
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
54
November, 2018
25
December, 2018
23
October, 2019
18
August, 2021
13
November, 2019
12
January, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
436
bam
391
fastq
382
bigWig
362
bed narrowPeak
323
bigBed narrowPeak
54
bed broadPeak
54
bigBed broadPeak
20
tagAlign
3
tar
1
bed bedMethyl
1
bigBed bedMethyl
Organism
455
Homo sapiens
Biosample type
943
tissue
455
cell line
336
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
359
liver
50
blood
50
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
453
AMP
2
T1D
Genome assembly (visualization)
377
hg19
319
GRCh38
Lab
437
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
455 results
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Clear Filters
ChIP-seq
WGBS
cell line
HepG2
358
1
GM12878
50
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
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