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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
ChIP-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
404
DNA binding
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
259
November, 2017
58
November, 2018
28
December, 2018
23
August, 2021
17
May, 2021
17
October, 2019
15
February, 2021
15
January, 2019
13
November, 2019
7
March, 2020
6
February, 2023
3
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
405
bigWig
404
bed narrowPeak
402
bam
360
fastq
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
462
Homo sapiens
Biosample type
1363
tissue
620
primary cell
464
cell line
219
in vitro differentiated cells
7
stem cell
Organ
327
liver
55
blood
55
bodily fluid
48
pancreas
40
epithelium
12
artery
12
blood vessel
12
heart
12
kidney
12
vasculature
1
mammary gland
Project
457
AMP
7
T1D
Genome assembly (visualization)
413
hg19
360
GRCh38
Lab
435
AMP-T2D consortium
21
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
48
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
control
assay_slims!
Transcription
BIOSAMPLE
ASSAY
464 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
318
1
2
2
2
1
1
GM12878
54
1
EndoC_BH1
13
19
1
3
3
2
2
1
smooth muscle cell of the coronary artery
4
8
Panc1
7
1
1
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