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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
ChIP-seq
109
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
390
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
control
65
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
2
other context
2
other post-translational modification
Date released
259
November, 2017
57
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
October, 2019
11
November, 2019
5
February, 2021
1
March, 2020
1
May, 2021
Available data
385
bigWig
379
bed narrowPeak
375
bam
358
fastq
347
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
16
tagAlign
3
tar
Organism
390
Homo sapiens
Biosample type
554
tissue
390
cell line
226
primary cell
161
in vitro differentiated cells
2
stem cell
Organ
318
liver
54
blood
54
bodily fluid
13
epithelium
13
pancreas
4
artery
4
blood vessel
4
heart
4
vasculature
Project
388
AMP
2
T1D
Genome assembly (visualization)
381
hg19
333
GRCh38
Lab
376
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
month_released!
October, 2019
BIOSAMPLE
ASSAY
390 results
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Clear Filters
ChIP-seq
cell line
HepG2
318
GM12878
54
EndoC_BH1
13
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
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