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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ATAC-seq
10
ChIP-seq
9
total RNA-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA accessibility
11
Transcription
10
DNA binding
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
17
August, 2021
16
May, 2021
6
February, 2023
6
November, 2017
4
March, 2020
4
November, 2018
3
November, 2020
2
March, 2023
1
December, 2018
1
May, 2020
1
October, 2019
1
October, 2022
Available data
14
tsv
11
fastq
10
bam
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
58
Homo sapiens
Biosample type
838
tissue
435
primary cell
65
in vitro differentiated cells
62
cell line
7
stem cell
Organ
24
liver
23
pancreas
22
epithelium
4
kidney
1
mammary gland
Project
55
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
464
GRCh38
Lab
37
AMP-T2D consortium
15
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
24
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
control
assembly!
hg19
BIOSAMPLE
ASSAY
62 results
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ATAC-seq
ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
16
3
3
2
2
1
HepG2
9
9
2
1
1
1
1
EndoC-BH1
1
1
HEK293T
2
MCF-7
1
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