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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
396
DNA binding
Target of assay
353
transcription factor
89
recombinant protein
control
62
RNA binding protein
38
histone
38
histone modification
22
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
255
November, 2017
53
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
14
October, 2019
11
November, 2019
5
February, 2021
1
March, 2020
1
May, 2021
Available data
390
bigWig
384
bed narrowPeak
381
bam
350
fastq
345
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
16
tagAlign
3
tar
Organism
396
Homo sapiens
Biosample type
722
tissue
396
cell line
246
primary cell
161
in vitro differentiated cells
2
stem cell
Organ
310
liver
54
blood
54
bodily fluid
20
pancreas
13
epithelium
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
394
AMP
2
T1D
Genome assembly (visualization)
386
hg19
340
GRCh38
Lab
382
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
26
inconsistent control read length
inconsistent control run_type
target.investigated_as!
control
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
cell line
HepG2
310
GM12878
54
EndoC_BH1
13
Panc1
7
smooth muscle cell of the coronary artery
4
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