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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
Assay category
353
DNA binding
Target of assay
353
transcription factor
89
recombinant protein
control
62
RNA binding protein
38
histone
38
histone modification
22
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
237
November, 2017
53
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
348
bigWig
344
bed narrowPeak
341
bam
329
fastq
320
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
353
Homo sapiens
Biosample type
353
cell line
94
tissue
49
in vitro differentiated cells
10
primary cell
Organ
289
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
353
AMP
Genome assembly (visualization)
344
hg19
303
GRCh38
Lab
342
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
inconsistent control run_type
target.investigated_as!
control
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
353 results
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ChIP-seq
cell line
HepG2
289
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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