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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
Assay category
202
DNA binding
Target of assay
197
histone
197
histone modification
115
narrow histone mark
82
broad histone mark
control
5
transcription factor
Date released
67
November, 2017
51
August, 2017
40
October, 2019
27
May, 2020
12
October, 2017
5
February, 2021
Available data
2281
bigWig
2246
bam
1388
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
675
fastq
272
bed broadPeak
235
bigBed broadPeak
205
bed bed3+
202
tagAlign
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
196
Homo sapiens
Biosample type
186
tissue
98
primary cell
30
in vitro differentiated cells
16
cell line
Organ
99
brain
55
liver
14
pancreas
13
musculature of body
7
adipose tissue
7
connective tissue
4
artery
4
blood vessel
4
heart
4
vasculature
1
pituitary gland
Project
202
AMP
Genome assembly (visualization)
130
GRCh38
121
hg19
Lab
202
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
control
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ChIP-seq
tissue
liver
44
substantia nigra
14
caudate nucleus
13
layer of hippocampus
13
skeletal muscle tissue
13
+ See 43 more…
cell line
HepG2
11
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
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