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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
358
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
259
November, 2017
58
November, 2018
28
December, 2018
20
January, 2019
Available data
509
bigWig
506
bam
404
bed narrowPeak
365
fastq
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
365
Homo sapiens
Biosample type
393
primary cell
365
cell line
310
tissue
119
in vitro differentiated cells
3
stem cell
Organ
311
liver
54
blood
54
bodily fluid
Project
365
AMP
Genome assembly (visualization)
354
hg19
321
GRCh38
Lab
365
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
304
5
1
1
GM12878
54
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