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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
374
DNA binding
113
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
control
65
RNA binding protein
38
histone
38
histone modification
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
244
November, 2017
93
February, 2021
51
November, 2018
40
August, 2021
26
December, 2018
21
May, 2021
21
October, 2019
14
January, 2019
14
November, 2019
11
March, 2020
6
February, 2023
3
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
479
bigWig
476
bam
374
bed narrowPeak
335
fastq
325
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
16
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
545
Homo sapiens
Biosample type
2588
tissue
1052
primary cell
547
cell line
354
in vitro differentiated cells
7
stem cell
Organ
321
liver
81
pancreas
74
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
45
blood
45
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
538
AMP
9
T1D
Genome assembly (visualization)
487
hg19
436
GRCh38
Lab
509
AMP-T2D consortium
30
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Anna Gloyn, Oxford
Audit category:
84
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
control
chromatin remodeller
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
547 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
298
14
1
2
2
2
1
1
EndoC_BH1
13
33
19
1
3
3
2
2
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
44
1
Panc1
7
1
1
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