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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA binding
11
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
7
control
3
histone
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
6
November, 2020
5
February, 2023
2
March, 2023
Available data
11
bed narrowPeak
11
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
42
Homo sapiens
Biosample type
450
primary cell
317
tissue
44
cell line
34
in vitro differentiated cells
2
stem cell
Organ
28
liver
6
epithelium
6
pancreas
2
kidney
Project
37
AMP
5
T1D
2
community
Genome assembly (visualization)
12
hg19
Lab
AMP-T2D consortium
31
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
7
inconsistent ontology term
target.investigated_as!
histone modification
lab.title!
AMP-T2D consortium
target.investigated_as!!
histone modification
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
15
9
2
1
1
EndoC_BH1
6
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
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