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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
360
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
46
November, 2018
28
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
352
fastq
351
bam
314
bigWig
292
bed narrowPeak
280
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
15
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tagAlign
1
vcf
Organism
383
Homo sapiens
Biosample type
383
cell line
291
tissue
11
primary cell
3
in vitro differentiated cells
Organ
383
liver
73
pancreas
67
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
383
AMP
Genome assembly (visualization)
312
hg19
255
GRCh38
Lab
355
AMP-T2D consortium
28
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
383 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
360
14
2
2
2
1
1
1
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