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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
Assay category
140
DNA binding
Target of assay
350
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
90
November, 2017
24
November, 2018
9
January, 2019
9
October, 2019
3
February, 2021
3
November, 2019
2
December, 2018
Available data
140
bam
125
fastq
75
bigWig
62
bed narrowPeak
61
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
1
tar
Organism
140
Homo sapiens
Biosample type
208
tissue
140
cell line
42
primary cell
38
in vitro differentiated cells
1
stem cell
Organ
109
liver
16
blood
16
bodily fluid
9
pancreas
3
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
140
AMP
Genome assembly (visualization)
74
hg19
58
GRCh38
Lab
140
AMP-T2D consortium
5
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
cell line
HepG2
109
GM12878
16
Panc1
6
EndoC_BH1
3
smooth muscle cell of the coronary artery
2
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