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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
3
MeRIP-seq
Assay category
82
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
58
November, 2017
9
October, 2019
4
August, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
78
bam
64
fastq
15
bigWig
4
tagAlign
2
bed narrowPeak
2
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
85
Homo sapiens
Biosample type
190
tissue
85
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
62
liver
11
pancreas
6
blood
6
bodily fluid
5
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
85
AMP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
78
AMP-T2D consortium
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
62
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
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