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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
Assay category
15
DNA binding
Target of assay
360
transcription factor
89
recombinant protein
81
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
7
November, 2017
November, 2019
3
October, 2019
2
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
15
bigWig
14
bed narrowPeak
13
bam
10
bigBed narrowPeak
8
fastq
6
bed broadPeak
6
bigBed broadPeak
5
tagAlign
Organism
15
Homo sapiens
Biosample type
309
tissue
115
primary cell
55
in vitro differentiated cells
15
cell line
1
stem cell
Organ
9
liver
5
pancreas
2
epithelium
1
blood
1
bodily fluid
Project
13
AMP
2
T1D
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
13
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
November, 2019
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
cell line
HepG2
9
Panc1
3
EndoC_BH1
2
GM12878
1
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