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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
40
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
17
November, 2017
10
November, 2019
7
October, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
39
bigWig
37
bam
37
bed narrowPeak
22
bigBed narrowPeak
18
fastq
15
bed broadPeak
15
bigBed broadPeak
11
tagAlign
Organism
40
Homo sapiens
Biosample type
595
tissue
237
primary cell
112
in vitro differentiated cells
40
cell line
2
stem cell
Organ
20
liver
19
pancreas
12
epithelium
1
blood
1
bodily fluid
Project
38
AMP
2
T1D
Genome assembly (visualization)
39
hg19
34
GRCh38
Lab
37
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
cell line
HepG2
20
EndoC_BH1
12
Panc1
7
GM12878
1
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