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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
Assay category
410
DNA binding
Target of assay
410
transcription factor
150
histone
150
histone modification
120
control
89
recombinant protein
76
RNA binding protein
75
broad histone mark
74
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
22
August, 2017
16
May, 2021
14
January, 2019
11
August, 2021
11
December, 2017
7
October, 2019
5
February, 2021
1
November, 2019
Available data
393
bigWig
386
bam
384
bed narrowPeak
370
fastq
330
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
9
tagAlign
6
bed bed3+
3
tar
Organism
410
Homo sapiens
Biosample type
361
cell line
89
tissue
49
in vitro differentiated cells
10
primary cell
Organ
299
liver
51
blood
51
bodily fluid
22
connective tissue
7
kidney
4
artery
4
blood vessel
4
epithelium
4
heart
4
vasculature
3
embryo
2
pancreas
Project
410
AMP
Genome assembly (visualization)
389
hg19
346
GRCh38
Lab
387
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
Audit category:
11
inconsistent ontology term
1
inconsistent control
Audit category:
17
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
410 results
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Clear Filters
ChIP-seq
cell line
HepG2
297
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
+ See 3 more…
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 4 more…
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