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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
ChIP-seq
Assay category
395
DNA binding
115
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
44
November, 2018
27
December, 2018
18
August, 2021
18
January, 2019
16
October, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
376
bam
338
fastq
323
bigWig
304
bed narrowPeak
272
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
395
Homo sapiens
Biosample type
867
tissue
395
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
296
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
kidney
Project
393
AMP
2
T1D
Genome assembly (visualization)
322
hg19
258
GRCh38
Lab
377
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
18
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
395 results
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ChIP-seq
cell line
HepG2
296
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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