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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
87
February, 2021
8
August, 2021
7
October, 2019
5
January, 2019
4
March, 2020
4
May, 2021
2
November, 2019
1
November, 2018
Available data
117
bam
108
bigWig
104
tsv
12
bed narrowPeak
6
fastq
2
bed bed3+
2
bigBed narrowPeak
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
Organism
118
Homo sapiens
Biosample type
1269
tissue
329
primary cell
145
in vitro differentiated cells
118
cell line
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
36
epithelium
36
pancreas
8
embryo
7
liver
5
kidney
Project
116
AMP
2
T1D
Genome assembly (visualization)
123
hg19
118
GRCh38
Lab
118
AMP-T2D consortium
Audit category:
37
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
33
1
H1-hESC
8
HepG2
5
1
1
Panc1
1
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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