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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
79
total RNA-seq
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
81
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Date released
53
February, 2021
24
August, 2021
6
March, 2020
5
February, 2023
5
January, 2019
5
October, 2019
2
March, 2023
1
December, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
84
tsv
73
bigWig
72
bam
7
fastq
3
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
1
hdf5
1
hic
1
txt
1
vcf
Organism
101
Homo sapiens
Biosample type
1607
tissue
367
primary cell
152
in vitro differentiated cells
104
cell line
7
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
epithelium
45
pancreas
22
liver
9
kidney
8
embryo
1
mammary gland
Project
97
AMP
5
T1D
2
community
Genome assembly (visualization)
74
hg19
73
GRCh38
Lab
81
AMP-T2D consortium
16
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
ATAC-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
2
2
2
1
1
H1-hESC
8
EndoC_BH1
3
2
EndoC-BH1
1
1
HEK293T
2
Panc1
1
1
RCC 7860 vector
1
1
early embryonic cell
2
MCF-7
1
MIN6
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
Synthesized DNA
1
fibroblast cell line
1
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