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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
ATAC-seq
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
1
3D chromatin structure
1
DNA accessibility
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
6
November, 2020
4
May, 2021
2
August, 2021
2
March, 2020
2
November, 2019
2
October, 2019
1
February, 2023
Available data
35
bam
35
bigWig
34
tsv
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
44
Homo sapiens
Biosample type
242
primary cell
45
cell line
3
tissue
2
in vitro differentiated cells
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
45
epithelium
45
pancreas
22
liver
9
kidney
8
embryo
1
mammary gland
Project
43
AMP
2
T1D
Genome assembly (visualization)
36
hg19
35
GRCh38
Lab
39
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
42
inconsistent ontology term
assay_title!
ChIP-seq
ATAC-seq
BIOSAMPLE
ASSAY
45 results
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total RNA-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
6
2
1
1
glomerular visceral epithelial cell
1
1
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