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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Date released
13
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
1
November, 2018
Available data
15
tsv
7
bam
7
fastq
6
bigWig
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bed narrowPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
23
Homo sapiens
Biosample type
206
tissue
23
cell line
10
primary cell
Organ
64
epithelium
64
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
23
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
23
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
13
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
23 results
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total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
14
2
2
2
1
1
1
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