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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
29
DNA accessibility
Date released
16
May, 2021
10
February, 2021
6
March, 2020
1
January, 2018
1
May, 2020
1
November, 2019
Available data
10
bam
10
bed narrowPeak
6
tsv
3
bigWig
1
bed bed3
1
bed bed3+
Organism
35
Homo sapiens
Biosample type
285
tissue
217
primary cell
47
in vitro differentiated cells
35
cell line
4
stem cell
Organ
19
epithelium
19
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
3
liver
2
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
35
AMP
Genome assembly (visualization)
14
hg19
10
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
35 results
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ATAC-seq
pCHi-C
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
2
GM12878
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
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