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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
ChIP-seq
113
total RNA-seq
29
ATAC-seq
10
pCHi-C
6
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
8
March, 2020
3
February, 2023
1
February, 2021
1
May, 2020
Available data
9
tsv
1
bed bed3+
Organism
13
Homo sapiens
Biosample type
25
tissue
17
primary cell
9
cell line
5
in vitro differentiated cells
4
stem cell
Organ
2
kidney
2
liver
1
connective tissue
1
mammary gland
Project
10
AMP
3
T1D
Genome assembly (visualization)
1
hg19
Lab
10
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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pCHi-C
CRISPR genome editing followed by DNA sequencing
cell line
EndoC_BH1
3
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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