Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
Date released
79
February, 2021
17
August, 2021
8
March, 2020
5
January, 2019
4
May, 2021
4
October, 2019
1
May, 2020
1
November, 2019
Available data
118
tsv
104
bam
104
bigWig
5
fastq
1
bed bed3+
Organism
119
Homo sapiens
Biosample type
1062
tissue
264
primary cell
141
in vitro differentiated cells
119
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
33
pancreas
16
liver
8
embryo
6
kidney
1
mammary gland
Project
117
AMP
2
T1D
Genome assembly (visualization)
105
hg19
104
GRCh38
Lab
110
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
38
inconsistent ontology term
BIOSAMPLE
ASSAY
119 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
2
H1-hESC
8
RCC 7860 vector
1
1
early embryonic cell
2
MCF-7
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
fibroblast cell line
1
glomerular visceral epithelial cell
1
See all biosamples
Download