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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
3D chromatin structure
Date released
3
March, 2020
1
August, 2021
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2019
1
October, 2019
Available data
4
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
bigWig
1
fastq
1
hdf5
Organism
9
Homo sapiens
Biosample type
41
tissue
27
primary cell
9
cell line
9
in vitro differentiated cells
4
stem cell
Organ
4
liver
2
kidney
2
pancreas
1
epithelium
mammary gland
Project
9
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
8
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
9 results
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pCHi-C
Hi-C
cell line
HepG2
2
2
EndoC_BH1
1
Panc1
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
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