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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
19
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
3D chromatin structure
Date released
3
March, 2020
1
August, 2021
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2019
Available data
4
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
fastq
Organism
8
Homo sapiens
Biosample type
41
tissue
26
primary cell
9
in vitro differentiated cells
8
cell line
4
stem cell
Organ
4
liver
2
kidney
1
epithelium
mammary gland
1
pancreas
Project
8
AMP
Genome assembly (visualization)
4
hg19
GRCh38
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
mammary gland
assembly!
GRCh38
BIOSAMPLE
ASSAY
8 results
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pCHi-C
Hi-C
cell line
HepG2
2
2
EndoC_BH1
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
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