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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
3
ATAC-seq
Assay category
65
DNA binding
3
DNA accessibility
Target of assay
47
transcription factor
13
control
5
RNA binding protein
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
chromatin remodeller
Date released
51
November, 2017
14
August, 2021
2
March, 2020
1
January, 2018
Available data
119
bam
106
fastq
68
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
68
Homo sapiens
Biosample type
94
primary cell
68
cell line
60
tissue
16
in vitro differentiated cells
1
stem cell
Organ
65
liver
2
epithelium
2
pancreas
1
blood
1
bodily fluid
Project
68
AMP
Genome assembly (visualization)
517
hg19
GRCh38
Lab
54
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
ATAC-seq
cell line
HepG2
65
EndoC_BH1
2
GM12878
1
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