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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
3
ATAC-seq
Assay category
51
DNA binding
3
DNA accessibility
Target of assay
36
transcription factor
13
control
4
RNA binding protein
2
chromatin remodeller
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
51
November, 2017
2
March, 2020
1
January, 2018
Available data
119
bam
106
fastq
54
bigWig
32
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
6
tagAlign
6
tsv
3
tar
1
bed bed3+
1
bedpe bed3+
1
hic
1
txt
Organism
54
Homo sapiens
Biosample type
94
primary cell
60
tissue
54
cell line
16
in vitro differentiated cells
1
stem cell
Organ
51
liver
2
epithelium
2
pancreas
1
blood
1
bodily fluid
Project
54
AMP
Genome assembly (visualization)
503
hg19
GRCh38
Lab
54
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
ATAC-seq
cell line
HepG2
51
EndoC_BH1
2
GM12878
1
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