Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
19
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
136
DNA binding
19
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
81
control
52
transcription factor
7
RNA binding protein
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
3
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
36
August, 2021
16
May, 2021
10
October, 2019
6
February, 2023
6
March, 2020
6
November, 2020
4
November, 2018
3
January, 2019
3
November, 2019
2
February, 2021
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
October, 2022
Available data
117
bam
106
fastq
68
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
15
tsv
14
bed broadPeak
14
bigBed broadPeak
4
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
txt
1
vcf
Organism
192
Homo sapiens
Biosample type
890
tissue
539
primary cell
196
cell line
129
in vitro differentiated cells
7
stem cell
Organ
133
liver
37
pancreas
30
epithelium
7
blood
7
bodily fluid
7
kidney
2
artery
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
189
AMP
5
T1D
2
community
Genome assembly (visualization)
466
hg19
GRCh38
Lab
149
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
35
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
196 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
EndoC_BH1
2
18
6
3
1
2
2
1
GM12878
6
1
Panc1
7
EndoC-BH1
1
1
HEK293T
2
RCC 7860 vector
1
1
MCF-7
1
MIN6
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
Synthesized DNA
1
fibroblast cell line
1
iPSC derived cell line
1
See all biosamples
Download