Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
346
DNA binding
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
57
November, 2018
27
December, 2018
16
October, 2019
15
January, 2019
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
359
bam
358
bed narrowPeak
350
bigWig
323
bigBed narrowPeak
316
fastq
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
360
Homo sapiens
Biosample type
901
tissue
360
cell line
284
primary cell
138
in vitro differentiated cells
3
stem cell
Organ
263
liver
54
blood
54
bodily fluid
22
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
358
AMP
2
T1D
Genome assembly (visualization)
426
hg19
360
GRCh38
Lab
360
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
BIOSAMPLE
ASSAY
360 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
1
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
See all biosamples
Download