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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
WGBS
Assay category
346
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
56
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
462
bam
453
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
320
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
hdf5
Organism
463
Homo sapiens
Biosample type
1803
tissue
536
primary cell
463
cell line
265
in vitro differentiated cells
3
stem cell
Organ
267
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
459
AMP
4
T1D
Genome assembly (visualization)
530
hg19
463
GRCh38
Lab
463
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_title!
WGBS
BIOSAMPLE
ASSAY
463 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
261
5
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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