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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
5
total RNA-seq
1
WGBS
Assay category
315
DNA binding
5
Transcription
1
DNA methylation
Target of assay
296
transcription factor
81
recombinant protein
57
RNA binding protein
28
chromatin remodeller
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
57
November, 2018
27
December, 2018
20
January, 2019
Available data
463
bam
454
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
321
Homo sapiens
Biosample type
321
cell line
280
tissue
229
primary cell
118
in vitro differentiated cells
3
stem cell
Organ
267
liver
54
blood
54
bodily fluid
Project
321
AMP
Genome assembly (visualization)
367
hg19
321
GRCh38
Lab
321
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
BIOSAMPLE
ASSAY
321 results
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ChIP-seq
total RNA-seq
WGBS
cell line
HepG2
261
5
1
GM12878
54
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