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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ChIP-seq
100
total RNA-seq
10
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
339
DNA binding
100
Transcription
11
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
302
transcription factor
81
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
13
November, 2019
8
August, 2021
8
October, 2019
5
March, 2020
5
May, 2021
Available data
451
bam
442
bigWig
350
bed narrowPeak
322
bigBed narrowPeak
321
fastq
100
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
452
Homo sapiens
Biosample type
1654
tissue
508
primary cell
452
cell line
265
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
kidney
8
embryo
Project
448
AMP
4
T1D
Genome assembly (visualization)
518
hg19
452
GRCh38
Lab
452
AMP-T2D consortium
Audit category:
47
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
organ_slims!
kidney
BIOSAMPLE
ASSAY
452 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
1
early embryonic cell
2
iPSC derived cell line
1
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