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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
407
ChIP-seq
104
total RNA-seq
3
Hi-C
1
pCHi-C
Assay category
407
DNA binding
104
Transcription
DNA accessibility
3
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
84
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
18
October, 2019
13
November, 2019
5
March, 2020
5
May, 2021
Available data
512
bigWig
497
bam
388
bed narrowPeak
367
fastq
349
bigBed narrowPeak
104
tsv
58
bed broadPeak
58
bigBed broadPeak
17
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
hdf5
Organism
515
Homo sapiens
Biosample type
1467
tissue
521
primary cell
515
cell line
254
in vitro differentiated cells
3
stem cell
Organ
329
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
54
pancreas
48
epithelium
11
kidney
8
embryo
Project
511
AMP
4
T1D
Genome assembly (visualization)
515
hg19
452
GRCh38
Lab
500
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
57
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
515 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
cell line
HepG2
322
5
1
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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