Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
13
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
7
histone
7
histone modification
6
control
4
broad histone mark
3
narrow histone mark
Date released
15
October, 2019
1
February, 2023
Available data
14
bam
8
bigWig
7
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
15
Homo sapiens
Biosample type
505
tissue
341
primary cell
16
cell line
3
in vitro differentiated cells
Organ
401
liver
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
16
pancreas
8
embryo
4
kidney
3
epithelium
1
mammary gland
Project
16
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
16
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
16 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
Panc1
13
1
1
EndoC_BH1
1
See all biosamples
Download