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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
Assay category
13
DNA binding
Target of assay
353
transcription factor
82
recombinant protein
75
control
64
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
7
November, 2017
3
October, 2019
2
August, 2021
1
January, 2019
Available data
13
bigWig
12
bed narrowPeak
11
bam
10
bigBed narrowPeak
8
fastq
6
bed broadPeak
6
bigBed broadPeak
5
tagAlign
Organism
13
Homo sapiens
Biosample type
307
tissue
106
primary cell
53
in vitro differentiated cells
13
cell line
1
stem cell
Organ
9
liver
3
pancreas
1
blood
1
bodily fluid
Project
13
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
11
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
cell line
HepG2
9
Panc1
3
GM12878
1
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