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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
pCHi-C
6
total RNA-seq
2
ATAC-seq
2
Hi-C
1
ChIP-seq
Assay category
6
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
315
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
61
November, 2018
43
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
22
February, 2023
21
November, 2019
19
March, 2020
6
November, 2020
5
January, 2018
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
13
tsv
9
bigWig
7
bam
4
bedpe bed3+
2
hic
2
ibed
1
bed narrowPeak
Organism
19
Homo sapiens
Biosample type
40
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
5
epithelium
5
pancreas
2
kidney
1
mammary gland
Project
16
AMP
3
T1D
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
19 results
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pCHi-C
total RNA-seq
ATAC-seq
Hi-C
ChIP-seq
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
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