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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
Assay category
43
DNA binding
Target of assay
25
transcription factor
18
histone
18
histone modification
13
chromatin remodeller
11
broad histone mark
7
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
9
December, 2017
6
August, 2017
5
November, 2018
2
February, 2018
Available data
43
bam
43
bigWig
43
fastq
41
bed narrowPeak
24
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
8
bed bed3+
Organism
43
Homo sapiens
Biosample type
26
cell line
17
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
26
liver
6
connective tissue
3
embryo
1
epithelium
Project
43
AMP
Genome assembly (visualization)
43
hg19
39
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
43
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
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BIOSAMPLE
ASSAY
43 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
Hepatic endoderm
1
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