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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
360
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
229
DNA accessibility
Date released
100
May, 2020
39
May, 2022
29
May, 2021
14
September, 2018
12
February, 2023
10
February, 2021
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
2
October, 2019
1
January, 2018
1
November, 2019
1
November, 2020
Available data
94
bam
81
bigWig
49
bed narrowPeak
39
zippedFastqFolder
32
fastq
22
bigBed narrowPeak
13
tsv
2
bed bed3
Organism
229
Homo sapiens
Biosample type
260
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
91
epithelium
90
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
2
connective tissue
2
liver
1
blood
1
bodily fluid
Project
180
AMP
49
HPAP
Genome assembly (visualization)
97
hg19
59
GRCh38
Lab
180
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
31
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic acinar cell
9
pancreatic ductal cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
osteoblast
2
regulatory T cell
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
immature natural killer cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
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