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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
5
ChIP-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA accessibility
11
Transcription
5
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
7
control
3
nucleotide modification
1
transcription factor
Date released
21
August, 2021
16
May, 2021
6
February, 2023
6
November, 2020
4
March, 2020
2
March, 2023
1
December, 2018
1
May, 2020
1
November, 2017
1
October, 2022
Available data
bam
60
fastq
14
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
55
Homo sapiens
Biosample type
723
tissue
425
primary cell
70
in vitro differentiated cells
59
cell line
7
stem cell
Organ
25
epithelium
25
pancreas
19
liver
4
kidney
1
mammary gland
Project
52
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
1
GRCh38
Lab
27
AMP-T2D consortium
19
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
27
inconsistent ontology term
files.file_type!
bam
assembly!
hg19
BIOSAMPLE
ASSAY
59 results
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Clear Filters
ATAC-seq
total RNA-seq
MeRIP-seq
ChIP-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
16
6
3
2
2
1
HepG2
9
5
2
1
1
1
EndoC-BH1
1
1
HEK293T
2
MCF-7
1
MIN6
1
RCC 7860 VHL
1
RCC 7860 vector
1
Synthesized DNA
1
fibroblast cell line
1
See all biosamples
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